access CHEMBL DB with python

CHEMBL is a one of big public database. It has lots of useful data. If you are good at python, pychembldb will be good tool. I like the python package. And I found another package chembl “chembl_web_client”. The package can install using pip. Yah, it easy. OK Let’s get data from python ! For exampleContinue reading “access CHEMBL DB with python”

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Make graph with python

Visualization of data is very important. Some years ago, I was interested in cytoscape to visualize molecular network (a.k.a. similarity, MMP, etc.). But it was difficult to integrate python script. Today, I found cool python library “d3py”. It can get from github ;-). “https://github.com/mikedewar/d3py” This library can make any graphs easy like ggplot, vincent andContinue reading “Make graph with python”